Global Computational Resources for Bioinformatics Research

RNA Structure Prediction/Visualization

Mfold:predict RNA secondary structure solely on the thermodynamic model

pknotsRG:parallels Mfold and it can predict pseudoknots

PKNOTS:uses a dynamic algorithm to predict RNA secondary strucutres

KineFold:uses ab initio menthod to predict RNA structure, including pseudoknots

PseudoBase:a database of known pseudoknots across many species

PseudoViewer:used to view RNA structure predicted from other programs