|
|
|
|
|
BLOCKS:HMM profile library
|
|
|
CDD:Conserved domain database
|
|
|
Interpro:A unified resource combining PROSITE, PRINTS, ProDom and Pfam,
SMART, and TIGRfam
|
|
|
iProClass database:From the Protein Information Resource
|
|
|
Pfam:Profile HMM library
|
|
|
PIR-ALN:Database of alignments
|
|
|
PRINTS:Protein fingerprints from SwissProt/TrEMBL
|
|
|
ProDom:Uses PSI-BLAST to cluster SWISS-PROT
|
|
|
PROSITE:A dictionary of protein motifs
|
|
|
SMART:Simple Modular Architecture Research Tool
|
|
|
TIGRFAMs:HMM library of protein families
|
|
|
PopSet:set of DNA sequences that have been collected to analyse the evolutionary
relatedness of a population
|
|
|
AMAS:Analyse Multiple Aligned Sequences
|
|
|
CINEMA:Colour INteractive Editor for Multiple Alignments
|
|
|
ClustalW:general purpose multiple sequence alignment program
|
|
|
DIALIGN:local MSA
|
|
|
Match-Box Web Server 1.3:protein sequence multiple alignment
|
|
|
MultAlin:Multiple sequence alignment with hierarchical clustering
|
|
|
MSA:Multiple Sequence Alignment
|
|
|
Musca:MUltiple Sequence Alignment
|
|
|
PileUp:general multiple sequence alignment program
|
|
|
SAGA and COFFEE:Cedric Notredame's work
|
|
|
MEME/MAST:search for motifs and then query it against a database
|
|