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Bioinformatics Research |
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Mfold: predict RNA secondary structure solely on the thermodynamic model
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pknotsRG: parallels Mfold and it can predict pseudoknots
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PKNOTS: uses a dynamic algorithm to predict RNA secondary structures
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KineFold: uses
ab initio method to predict RNA structure, including pseudoknots
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PseudoBase: a database of known pseudoknots across many species
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PseudoViewer: used to view RNA structure predicted from other programs
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